Bilimsel Yayınlar

Yayınlar
Al-Rubaye, Tala; Isa, Zenab; Erenkol, Doga; Tarahomi, Elham; Erdogan, Nuray Sogunmez (2026), "Multi-omics profiling uncovers LINC00486-associated lncRNA regulation in human traumatic brain injury", Genes and Genomics, Vol.48, No.1, 45-62 DOI: 10.1007/s13258-025-01687-y
Fidan, Vahap Gazi; Aydin, Dilvin; Yazgi, Irem; Akten, E. Demet (2026), "Reshaping globular dynamics of S. aureus pyruvate kinase via bond restraints to allosteric sites", Journal of Computer Aided Molecular Design, Vol.40, No.1, DOI: 10.1007/s10822-025-00713-1
Lima, Henrique Santos; Tsallis, Constantino; Eroglu, Deniz; Tirnakli, Ugur (2026), "Fourier's law breakdown for the planar-rotor chain with long-range interactions", Physica A Statistical Mechanics and Its Applications, Vol.685, DOI: 10.1016/j.physa.2026.131314
Kocagöz, Yigit; Erdogan, Nuray Sogunmez; Ozdinc, Sevval; Ipekgil, Dogac; Katkat, Esra; Ozhan, Gunes (2026), "Notum1a Inhibition promotes neurogenesis in the adult zebrafish brain", Scientific Reports, Vol.16, No.1, DOI: 10.1038/s41598-025-33883-x
Hassan, Gana; Özuğur Uysal, Bengü (2025), "Effect of MoS2 on Simple and Novel PEG/κ-Carrageenan Hydrogels for TNBC Cancer Drug Delivery", Journal of Macromolecular Science, Part B: Physics, Vol.64, No.2, 135-149 DOI: 10.1080/00222348.2024.2338631
Das, Ritu; Istif, Emin; Cebecioglu, Rumeysa; Ali, Mohsin; Atik, Yasin; Dağ, Çağdaş; Celikbas, Eda; Demirci, Gozde; Acar, Funda Yagcı; Hasanreisoğlu, Murat; Beker, Levent (2025), "Microneedles with Interdigitated Electrodes for In Situ Impedimetric VEGF Sensing", Advanced Materials Interfaces, Vol.12, No.9, DOI: 10.1002/admi.202400789
Yüksek, Aslı; Yıkınç, Batuhan; Nayır, İrem; Alnıgeniş, Defne; Fidan, Vahap Gazi; Topuz, Tayyip; Akten, Ebru Demet (2025), "Structural Descriptors for Subunit Interface Regions in Homodimers: Effect of Lipid Membrane and Secondary Structure Type", Journal of Chemical Information and Modeling, Vol.65, No.7, 3117-3126 DOI: 10.1021/acs.jcim.4c01233
Kökrek, Emel; Pir, Pınar (2025), "Distinct deregulation trends of transcriptional protein complexes in aging naive T cells", Journal of Leukocyte Biology, Vol.117, No.3, DOI: 10.1093/jleuko/qiae231
Yılmaz, Özgür; Biliz, Yağmur; Ayan, Sümeyra; Çevik, Özge; Karahasanoğlu, Müfide; Çotuker, Reyhan; Mert Şahin, Naz Mina; Gökkaya, Kübra; Gülyüz, Sevgi; Yelekçi, Kemal; Küçükgüzel, Güniz (2025), "Design and synthesis of thiosemicarbazides and 1,2,4-triazoles derived from ibuprofen as potential MetAP (type II) inhibitors", Chemico-Biological Interactions, Vol.416, DOI: 10.1016/j.cbi.2025.111555
Mirza, Fuat Kaan; Pekcan, Önder; Hekimoğlu, Mustafa; Baykaş, Tunçer (2025), "Stock price forecasting through symbolic dynamics and state transition graphs with a convolutional recurrent neural network architecture", Neural Computing and Applications, Vol.37, No.20, 15855-15890 DOI: 10.1007/s00521-025-11325-z
Mirza, Fuat Kaan; Baykaş, Tunçer; Hekimoğlu, Mustafa; Pekcan, Önder; Tunçay, Gönül Paçacı (2025), "Decoding rhythmic complexity: A nonlinear dynamics approach via visibility graphs for classifying asymmetrical rhythmic frameworks of Turkish classical music", Applied Mathematics and Computation, Vol.507, DOI: 10.1016/j.amc.2025.129565
Erdogan, Nuray Sogunmez; Eroglu, Deniz (2025), "Sparse deconvolution of cell type medleys in spatial transcriptomics", Plos Computational Biology, Vol.21, No.6 JUNE, DOI: 10.1371/journal.pcbi.1013169
Mirza, Fuat Kaan; Öz, Usame; Hekimoğlu, Mustafa; Aydemir, Mehmet Timur; Pural, Yusuf Enes; Baykaş, Tunçer; Pekcan, Önder (2025), "A Novel Multiscale Graph Signal Processing and Network Dynamics Approach to Vibration Analysis for Stone Size Discrimination via Nonlinear Manifold Embeddings and a Convolutional Self-Attention Model", Rock Mechanics and Rock Engineering, Vol.58, No.11, 12769-12799 DOI: 10.1007/s00603-025-04779-z
Birgül, Kaan; Atlıhan, İrem; Dere, Damla; Yelekçi, Kemal; Tiber, Pinar Mega; Orun, Oya; Küçükgüzel, Güniz (2025), "Investigation of novel nimesulide derivatives against breast cancer", Bioorganic Chemistry, Vol.164, DOI: 10.1016/j.bioorg.2025.108850
Firat, Toprak; Eroglu, Deniz (2025), "Data-driven modeling of traffic flow in macroscopic network systems", Chaos, Vol.35, No.9, DOI: 10.1063/5.0285930
Ozdes, Celik; Ediger, Volkan; Eroglu, Deniz (2025), "Forecasting critical economic & political events via electricity consumption patterns in the United States of America and Turkey", Humanities and Social Sciences Communications, Vol.12, No.1, DOI: 10.1057/s41599-025-04904-x
Tülek, Ahmet; Poyraz, Yağmur; Şükür, Gözde; Paçal, Nurettin; Özdemir, F. İnci; Yildirim, Deniz; Eşsiz, Şebnem (2025), "Engineering of Geobacillus kaustophilus lipase for enhanced catalytic efficiency and methanol tolerance in biodiesel production from sunflower oil", International Journal of Biological Macromolecules, Vol.331, DOI: 10.1016/j.ijbiomac.2025.148467
Mirza, Fuat Kaan; Gürsoy, Ahmet Fazıl; Baykaş, Tunçer; Hekimoğlu, Mustafa; Pekcan, Önder (2024), "Residual LSTM neural network for time dependent consecutive pitch string recognition from spectrograms: a study on Turkish classical music makams", Multimedia Tools and Applications, Vol.83, No.14, 41243-41271 DOI: 10.1007/s11042-023-17105-y
Abbasiasl, Taher; Mirlou, Fariborz; Mirzajani, Hadi; Bathaei, Mohammad Javad; Istif, Emin; Shomalizadeh, Narges; Cebecioğlu, Rümeysa Emine; Özkahraman, Ecem Ezgi; Yener, Umut Can; Beker, Levent (2024), "A Wearable Touch-Activated Device Integrated with Hollow Microneedles for Continuous Sampling and Sensing of Dermal Interstitial Fluid", Advanced Materials, Vol.36, No.2, DOI: 10.1002/adma.202304704
Sireci, Siran; Kocagöz, Yigit; Alkiraz, Aysu Sevval; Güler, Kardelen; Dokuzluoglu, Zeynep; Balcioglu, Ecem; Meydanli, Sinem; Demirler, Mehmet Can; Erdogan, Nuray Sögünmez; Fuss, Stefan Herbert (2024), "HB-EGF promotes progenitor cell proliferation and sensory neuron regeneration in the zebrafish olfactory epithelium", FEBS Journal, Vol.291, No.10, 2098-2133 DOI: 10.1111/febs.17033
Guner-Yılmaz, Ozde Zeynep; Kurkcuoglu, Ozge; Akten, Ebru Demet (2024), "Tunnel-like region observed as a potential allosteric site in Staphylococcus aureus Glyceraldehyde-3-phosphate dehydrogenase", Archives of Biochemistry and Biophysics, Vol.752, DOI: 10.1016/j.abb.2023.109875
Istif, Emin; Ali, Mohsin; Ozuaciksoz, Elif Yaren; Morova, Yagız; Beker, Levent (2024), "Near-Infrared Triggered Degradation for Transient Electronics", ACS Omega, Vol.9, No.2, 2528-2535 DOI: 10.1021/acsomega.3c07203
Özuğur Uysal, Bengü; Osma, Büşra; Evingür, Gülşen Akın; Pekcan, Önder (2024), "The Effect of Pyranine and MoS2 Content on the Optical Properties of Polyacrylamide-MoS2 Composite Gels", Journal of Macromolecular Science, Part B: Physics, Vol.63, No.11, 1097-1109 DOI: 10.1080/00222348.2024.2302287
Mirlou, Fariborz; Abbasiasl, Taher; Mirzajani, Hadi; Istif, Emin; Akhtar, Muhammad Junaid; Cakır, Cengiz; Beker, Levent (2024), "Continuous Glycemic Monitoring Enabled by A Wi-Fi Energy-Harvesting Wearable Sweat-Sensing Patch", Advanced Materials Technologies, Vol.9, No.7, DOI: 10.1002/admt.202301583
Albayrak Halac, Fatma; Essiz, Sebnem; Servili, Burak; Altundas, Ramazan; Onur Sucu, Bilgesu; Kulu, Irem (2024), "Synthesis of New Imidazo[1,2-a]pyridine Triazole Hybrid Molecules as Potential Apoptotic Antitumor Agents", ChemistrySelect, Vol.9, No.8, DOI: 10.1002/slct.202304911
Bakrani, Sajjad; Kiran, Narcicegi; Eroglu, Deniz; Pereira, Tiago (2024), "Cycle-Star Motifs: Network Response to Link Modifications", Journal of Nonlinear Science, Vol.34, No.4, DOI: 10.1007/s00332-024-10034-6
Mert, Naz Mina; Erdogan, Buse; Yelekçi, Kemal (2024), "Repurposing of known drugs from multiple libraries to identify novel and potential selective inhibitors of HDAC6 via in silico approach and molecular modeling", Heliyon, Vol.10, No.15, DOI: 10.1016/j.heliyon.2024.e35020
Eroglu, Deniz; Boghosian, Bruce M.; Borges, Ernesto P.; Tirnakli, Ugur (2024), "The Statistics of q-Statistics", Entropy, Vol.26, No.7, DOI: 10.3390/e26070554
Mirza, Fuat Kaan; Baykaş, Tunçer; Hekimoğlu, Mustafa; Pekcan, Önder; Tunçay, Gönül Paçacı (2024), "Decoding compositional complexity: Identifying composers using a model fusion-based approach with nonlinear signal processing and chaotic dynamics", Chaos, Solitons and Fractals, Vol.187, DOI: 10.1016/j.chaos.2024.115450
Cassidy, Anna; Farmer, Veronica; Arpağ, Göker; Zanic, Marija (2024), "The GTP-tubulin cap is not the determinant of microtubule end stability in cells", Molecular biology of the cell, Vol.35, No.10, DOI: 10.1091/mbc.E24-07-0307
Poyraz, Yağmur; Baltacı, Nisa; Hassan, Gana; Alayoubi, Oubadah; Uysal, Bengü Özuğur; Pekcan, Önder (2024), "Composite Hydrogel of Polyacrylamide/Starch/Gelatin as a Novel Amoxicillin Delivery System", Gels, Vol.10, No.10, DOI: 10.3390/gels10100625
Turkmenoglu, Ipek; Kurtulus, Gamze; Sesal, Cenk; Kurkcuoglu, Ozge; Ayyildiz, Merve; Celiker, Serkan; Ozhelvaci, Fatih; Du, Xin; Liu, George Y.; Arditi, Moshe; Akten, Ebru Demet (2024), "Effective drug design screening in bacterial glycolytic enzymes via targeting alternative allosteric sites", Archives of Biochemistry and Biophysics, Vol.762, DOI: 10.1016/j.abb.2024.110190
Pekcan, Onder; Arsan, Taner (2024), "FRACTAL ANALYSIS OF CARDIAC SPECTRA", Symmetry Culture and Science, Vol.35, No.2, 141-151 DOI: 10.26830/symmetry_2024_2_141
Boumezber, Sarah; Yelekçi, Kemal (2023), "Screening of novel and selective inhibitors for neuronal nitric oxide synthase (nNOS) via structure-based drug design techniques", Journal of Biomolecular Structure and Dynamics, Vol.41, No.8, 3607-3629 DOI: 10.1080/07391102.2022.2054471
Ozdes, Celik; Eroglu, Deniz (2023), "Transformation cost spectrum for irregularly sampled time series", European Physical Journal: Special Topics, Vol.232, No.1, 35-46 DOI: 10.1140/epjs/s11734-022-00512-x
Erensoy, Gizem; Ding, Kai; Zhan, Chang Guo; Çiftçi, Gamze; Yelekçi, Kemal; Duracık, Merve; Bingöl Özakpınar, Özlem; Aydemir, Esra; Yılmaz, Zübeyde Nur; Şahin, Fikrettin; Kulabaş, Necla; Tatar, Esra; Küçükgüzel, İlkay (2023), "Synthesis, in vitro and in silico studies on novel 3-aryloxymethyl-5-[(2-oxo-2-arylethyl)sulfanyl]-1,2,4-triazoles and their oxime derivatives as potent inhibitors of mPGES-1", Journal of Molecular Structure, Vol.1272, DOI: 10.1016/j.molstruc.2022.134154
Yelekçi, Kemal; Erdem, Safiye Sağ (2023), "Computational Chemistry and Molecular Modeling of Reversible MAO Inhibitors", 1:
Bülbül, Bahadır; Ding, Kai; Zhan, Chang Guo; Çiftçi, Gamze; Yelekçi, Kemal; Gürboğa, Merve; Özakpınar, Özlem Bingöl; Aydemir, Esra; Baybağ, Deniz; Şahin, Fikrettin; Kulabaş, Necla; Helvacıoğlu, Sinem; Charehsaz, Mohammad; Tatar, Esra; Özbey, Süheyla; Küçükgüzel, İlkay (2023), "Novel 1,2,4-triazoles derived from Ibuprofen: synthesis and in vitro evaluation of their mPGES-1 inhibitory and antiproliferative activity", Molecular Diversity, Vol.27, No.5, 2185-2215 DOI: 10.1007/s11030-022-10551-0
Osma, Büşra; Pekcan, Önder; Akın Evingür, Gülşen (2023), "Kinetics models for polyacrylamide-graphene oxide composites as antifoulant", Polymer Engineering and Science, Vol.63, No.1, 238-248 DOI: 10.1002/pen.26201
Bathaei, Mohammad Javad; Singh, Rahul; Mirzajani, Hadi; Istif, Emin; Akhtar, Muhammad Junaid; Abbasiasl, Taher; Beker, Levent (2023), "Photolithography-Based Microfabrication of Biodegradable Flexible and Stretchable Sensors", Advanced Materials, Vol.35, No.6, DOI: 10.1002/adma.202207081
Ünver, Batuhan; Pekcan, Önder; Akın Evingür, Gülşen (2023), "Optical and mechanical properties of PNIPAm-MWCNTs and PNIPAm-GO composites", Journal of Applied Polymer Science, Vol.140, No.9, DOI: 10.1002/app.53539
Tülek, Ahmet; Günay, Elif; Servili, Burak; Essiz, Sebnem; Binay, Barış; Yildirim, Deniz (2023), "Sustainable production of formic acid from CO2 by a novel immobilized mutant formate dehydrogenase", Separation and Purification Technology, Vol.309, DOI: 10.1016/j.seppur.2022.123090
Tsallis, Constantino; Lima, Henrique Santos; Tirnakli, Ugur; Eroglu, Deniz (2023), "First-principle validation of Fourier's law in d=1,2,3 classical systems", Physica D: Nonlinear Phenomena, Vol.446, DOI: 10.1016/j.physd.2023.133681
Topal, Irem; Eroglu, Deniz (2023), "Reconstructing Network Dynamics of Coupled Discrete Chaotic Units from Data", Physical Review Letters, Vol.130, No.11, DOI: 10.1103/PhysRevLett.130.117401
Kalaycıoğlu, Zeynep; Özuğur Uysal, Bengü; Pekcan, Önder; Erim, F. Bedia (2023), "Efficient Photocatalytic Degradation of Methylene Blue Dye from Aqueous Solution with Cerium Oxide Nanoparticles and Graphene Oxide-Doped Polyacrylamide", ACS Omega, Vol.8, No.14, 13004-13015 DOI: 10.1021/acsomega.3c00198
Istif, Emin; Mirzajani, Hadi; Dağ, Çağdaş; Mirlou, Fariborz; Ozuaciksoz, Elif Yaren; Cakır, Cengiz; Koydemir, Hatice Ceylan; Yilgor, Iskender; Yilgor, Emel; Beker, Levent (2023), "Miniaturized wireless sensor enables real-time monitoring of food spoilage", Nature Food, Vol.4, No.5, 427-436 DOI: 10.1038/s43016-023-00750-9
Istif, Emin; Beker, Levent (2023), "A low-cost wireless miniaturized device for food spoilage monitoring", Nature Food, DOI: 10.1038/s43016-023-00752-7
Ali, Mohsin; Bathaei, Mohammad Javad; Istif, Emin; Karimi, Seyed Nasir Hosseini; Beker, Levent (2023), "Biodegradable Piezoelectric Polymers: Recent Advancements in Materials and Applications", Advanced Healthcare Materials, Vol.12, No.23, DOI: 10.1002/adhm.202300318
Shirzad, Mohammad Musa; Kulabaş, Necla; Erdoğan, Ömer; Çevik, Özge; Dere, Damla; Yelekçi, Kemal; Danış, Özkan; Küçükgüzel, İlkay (2023), "Novel azole-urea hybrids as VEGFR-2 inhibitors: Synthesis, in vitro antiproliferative evaluation and in silico studies", Journal of Molecular Structure, Vol.1294, DOI: 10.1016/j.molstruc.2023.136448
Argunsah, Ali Özgür; Israely, Inbal (2023), "Homosynaptic plasticity induction causes heterosynaptic changes at the unstimulated neighbors in an induction pattern and location-specific manner", Frontiers in Cellular Neuroscience, Vol.17, DOI: 10.3389/fncel.2023.1253446
Bilget Guven, Ebru; Durmaz Sahin, Irem; Altiparmak, Duygu; Servili, Burak; Essiz, Sebnem; Cetin-Atalay, Rengul; Tuncbilek, Meral (2023), "Newly synthesized 6-substituted piperazine/phenyl-9-cyclopentyl containing purine nucleobase analogs act as potent anticancer agents and induce apoptosis via inhibiting Src in hepatocellular carcinoma cells", RSC Medicinal Chemistry, Vol.14, No.12, 2658-2676 DOI: 10.1039/d3md00440f
Tareq, Shahad; Kirkil, Gokhan; Özuğur Uysal, Bengü (2023), "Superior Conductivity of Transparent ZnO/MoS2 Composite Films for Optoelectronic and Solar Cell Applications", Gels, Vol.9, No.11, DOI: 10.3390/gels9110906
Rinch, Wardah Afzal; Sogunmez, Nuray; Altaf, Aiman; Alsan, Huseyin Fuat; Arsan, Taner (2023), "Deciphering the Cluster-Specific Marker Genes via Integration of Single Cell RNA Sequencing Datasets", 2023 Innovations in Intelligent Systems and Applications Conference, ASYU 2023, DOI: 10.1109/ASYU58738.2023.10296679
Beytür, Sercan; Essiz, Sebnem; Özuğur Uysal, Bengü (2023), "Investigation of Structural and Antibacterial Properties of WS2-Doped ZnO Nanoparticles", ACS Omega, DOI: 10.1021/acsomega.3c09041
Düzkan, Berke; Uysal, Bengü Özuğur; Pekcan, Önder (2022), "Surfactant-free one-step fabrication of gelatin/PAAm/MWCNT composites for biomedical applications", Polymer Bulletin, Vol.79, No.3, 1597-1614 DOI: 10.1007/s00289-021-03574-4
Albayati, Safana; Uba, Abdullahi Ibrahim; Yelekçi, Kemal (2022), "Potential inhibitors of methionine aminopeptidase type II identified via structure-based pharmacophore modeling", Molecular Diversity, Vol.26, No.2, 1005-1016 DOI: 10.1007/s11030-021-10221-7
Metin, Reyhan; Akten, Ebru Demet (2022), "Drug repositioning to propose alternative modulators for glucocorticoid receptor through structure-based virtual screening", Journal of Biomolecular Structure and Dynamics, Vol.40, No.21, 11418-11433 DOI: 10.1080/07391102.2021.1960608
Celebi, Metehan; Inan, Tugce; Kurkcuoglu, Ozge; Akten, Ebru Demet (2022), "Potential allosteric sites captured in glycolytic enzymes via residue-based network models: Phosphofructokinase, glyceraldehyde-3-phosphate dehydrogenase and pyruvate kinase", Biophysical Chemistry, Vol.280, DOI: 10.1016/j.bpc.2021.106701
Özuğur Uysal, Bengü; Akın Evingür, Gülşen; Pekcan, Önder (2022), "Polyacrylamide mediated polyvinyl pyrrolidone composites incorporated with aligned molybdenum disulfide", Journal of Applied Polymer Science, Vol.139, No.18, DOI: 10.1002/app.52061
Ata Ouda Al-Masri, Rahaf; Audu-Bida, Hajara; Eşsiz, Şebnem (2022), "Modelling of C-terminal tail of human STING and its interaction with tank-binding kinase 1", Turkish Journal of Biology, Vol.46, No.1, 69-81 DOI: 10.3906/biy-2108-90
Braun, Tobias; Fernandez, Cinthya N.; Eroglu, Deniz; Hartland, Adam; Breitenbach, Sebastian F.M.; Marwan, Norbert (2022), "Sampling rate-corrected analysis of irregularly sampled time series", Physical Review E, Vol.105, No.2, DOI: 10.1103/PhysRevE.105.024206
Birgül, Kaan; Uba, Abdullah Ibrahim; Çuhadar, Ozan; Sevinç, Sevgi Koçyiğit; Tiryaki, Selen; Tiber, Pınar Mega; Orun, Oya; Telci, Dilek; Yılmaz, Özgür; Yelekçi, Kemal; Güniz Küçükgüzel, (2022), "Synthesis and molecular modeling of MetAP2 of thiosemicarbazides, 1,2,4-triazoles, thioethers derived from (S)-Naproxen as possible breast cancer agents", Journal of Molecular Structure, Vol.1259, DOI: 10.1016/j.molstruc.2022.132739
Bakrani, Sajjad; Lamb, Jeroen S.W.; Turaev, Dmitry (2022), "Invariant manifolds of homoclinic orbits and the dynamical consequences of a super-homoclinic: A case study in R4 with Z2-symmetry and integral of motion", Journal of Differential Equations, Vol.327, 1-63 DOI: 10.1016/j.jde.2022.04.002
Celebi, Metehan; Akten, Ebru Demet (2022), "Altered Dynamics of S. aureus Phosphofructokinase via Bond Restraints at Two Distinct Allosteric Binding Sites", Journal of Molecular Biology, Vol.434, No.17, DOI: 10.1016/j.jmb.2022.167646
Polat, Emre Ozan; Cetin, M. Mustafa; Tabak, Ahmet Fatih; Güven, Ebru Bilget; Uysal, Bengü Özuğur; Arsan, Taner; Kabbani, Anas; Hamed, Houmeme; Gül, Sümeyye Berfin (2022), "Transducer Technologies for Biosensors and Their Wearable Applications", Biosensors, Vol.12, No.6, DOI: 10.3390/bios12060385
Babandi, Abba; Anosike, Chioma A.; Ezeanyika, Lawrence U.S.; Yelekçi, Kemal; Uba, Abdullahi Ibrahim (2022), "Molecular modeling studies of some phytoligands from Ficus sycomorus fraction as potential inhibitors of cytochrome CYP6P3 enzyme of Anopheles coluzzii", Jordan Journal of Pharmaceutical Sciences, Vol.15, No.2, 258-275 DOI: 10.35516/jjps.v15i2.324
Duan, Chao; Nishikawa, Takashi; Eroglu, Deniz; Motter, Adilson E. (2022), "Network structural origin of instabilities in large complex systems", Science Advances, Vol.8, No.28, DOI: 10.1126/sciadv.abm8310
Nijholt, Eddie; Ocampo-Espindola, Jorge Luis; Eroglu, Deniz; Kiss, István Z.; Pereira, Tiago (2022), "Emergent hypernetworks in weakly coupled oscillators", Nature Communications, Vol.13, No.1, DOI: 10.1038/s41467-022-32282-4
Cetin, M. Mustafa; Peng, Wenjing; Unruh, Daniel; Mayer, Michael F.; Mechref, Yehia; Yelekci, Kemal (2022), "Design, synthesis, molecular modeling, and bioactivity evaluation of 1,10-phenanthroline and prodigiosin (Ps) derivatives and their Copper(I) complexes against mTOR and HDAC enzymes as highly potent and effective new anticancer therapeutic drugs", Frontiers in Pharmacology, Vol.13, DOI: 10.3389/fphar.2022.980479
Zhu, Dingsheng; Sun, Bin; Tong, Lu; Wu, Yating; Cetin, M. Mustafa; Li, Hao (2022), "A π-Electron Rich Cage via the Friedel-Crafts Reaction", Organic Letters, Vol.24, No.49, 8980-8985 DOI: 10.1021/acs.orglett.2c03560
Durmaz, Sümeyye; Yildiz, Ekrem; Uysal, Bengü Özuğur; Pekcan, Önder (2022), "3D self-assemble formation of molybdenum disulfide (MoS2)-doped polyacrylamide (PAAm) composite hydrogels", Turkish Journal of Physics, Vol.46, No.6, 239-251 DOI: 10.55730/1300-0101.2730
Evingür, Gülşen Akın; Sağlam, Nafia Alara; Çimen, Büşra; Uysal, Bengü Özuğur; Pekcan, Önder (2021), "The WS2 dependence on the elasticity and optical band gap energies of swollen PAAm composites", Journal of Composite Materials, Vol.55, No.1, 71-76 DOI: 10.1177/0021998320944210
Elmezayen, Ammar D.; Yelekçi, Kemal (2021), "Homology modeling and in silico design of novel and potential dual-acting inhibitors of human histone deacetylases HDAC5 and HDAC9 isozymes", Journal of Biomolecular Structure and Dynamics, Vol.39, No.17, 6396-6414 DOI: 10.1080/07391102.2020.1798812
Arda, Ertan; Kara, Selim; Pekcan, Önder; Akın Evingür, Gülşen (2021), "Evaluation of the fractal dimension of polyacrylamide during gelation and swelling", Materials Today Communications, Vol.26, DOI: 10.1016/j.mtcomm.2020.101980
Eroglu, Deniz (2021), "Network dynamics reconstruction from data", Turkish Journal of Physics, Vol.44, No.4, 394-403 DOI: 10.3906/fiz-2004-7
Salgin-Goksen, Umut; Telli, Gokcen; Erikci, Acelya; Dedecengiz, Ezgi; Tel, Banu Cahide; Kaynak, F. Betul; Yelekci, Kemal; Ucar, Gulberk; Gokhan-Kelekci, Nesrin (2021), "New 2-Pyrazoline and Hydrazone Derivatives as Potent and Selective Monoamine Oxidase A Inhibitors", Journal of Medicinal Chemistry, Vol.64, No.4, 1989-2009 DOI: 10.1021/acs.jmedchem.0c01504
Hu, Guang; Doruker, Pemra; Li, Hongchun; Demet Akten, Ebru (2021), "Editorial: Understanding Protein Dynamics, Binding and Allostery for Drug Design", Frontiers in Molecular Biosciences, Vol.8, DOI: 10.3389/fmolb.2021.681364
Banerjee, Abhirup; Goswami, Bedartha; Hirata, Yoshito; Eroglu, Deniz; Merz, Bruno; Kurths, Jurgen; Marwan, Norbert (2021), "Recurrence analysis of extreme event-like data", Nonlinear Processes in Geophysics, Vol.28, No.2, 213-229 DOI: 10.5194/npg-28-213-2021
Essiz, Sebnem; Gencel, Melis; Aktolun, Muhammed; Demir, Ayhan; Carpenter, Timothy S.; Servili, Burak (2021), "Correlated conformational dynamics of the human GluN1-GluN2A type N-methyl-D-aspartate (NMDA) receptor", Journal of Molecular Modeling, Vol.27, No.6, DOI: 10.1007/s00894-021-04755-8
Elmezayen, Ammar D.; Kemal, Yelekçi (2021), "Structure-based virtual screening for novel potential selective inhibitors of class IIa histone deacetylases for cancer treatment", Computational Biology and Chemistry, Vol.92, DOI: 10.1016/j.compbiolchem.2021.107491
Elmezayen, Ammar D.; Al-Obaidi, Anas; Yelekçi, Kemal (2021), "Discovery of novel isoform-selective histone deacetylases 5 and 9 inhibitors through combined ligand-based pharmacophore modeling, molecular mocking, and molecular dynamics simulations for cancer treatment", Journal of Molecular Graphics and Modelling, Vol.106, DOI: 10.1016/j.jmgm.2021.107937
Al-Obaidi, Anas; Elmezayen, Ammar D.; Yelekçi, Kemal (2021), "Homology modeling of human GABA-AT and devise some novel and potent inhibitors via computer-aided drug design techniques", Journal of Biomolecular Structure and Dynamics, Vol.39, No.11, 4100-4110 DOI: 10.1080/07391102.2020.1774417
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Sogunmez, Nuray; Akten, Ebru Demet (2020), "Distinctive communication networks in inactive states of β2-adrenergic receptor: Mutual information and entropy transfer analysis", Proteins: Structure, Function and Bioinformatics, Vol.88, No.11, 1458-1471 DOI: 10.1002/prot.25965
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Djikic, Teodora; Martí, Yasmina; Spyrakis, Francesca; Lau, Thorsten; Benedetti, Paolo; Davey, Gavin; Schloss, Patrick; Yelekci, Kemal (2019), "Human dopamine transporter: the first implementation of a combined in silico/in vitro approach revealing the substrate and inhibitor specificities", Journal of Biomolecular Structure and Dynamics, Vol.37, No.2, 291-306 DOI: 10.1080/07391102.2018.1426044
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Evingür, Gülşen Akin; Pekcan, Önder (2019), "Graphene oxide-polyacrylamide composites: Optical and mechanical characterizations", 1: 1