Scientific Publications

Publications
Hassan, Gana; Özuğur Uysal, Bengü (2025), "Effect of MoS2 on Simple and Novel PEG/κ-Carrageenan Hydrogels for TNBC Cancer Drug Delivery", , Vol.64, No.2, 135-149 DOI: 10.1080/00222348.2024.2338631
Das, Ritu; Istif, Emin; Cebecioglu, Rumeysa; Ali, Mohsin; Atik, Yasin; Dağ, Çağdaş; Celikbas, Eda; Demirci, Gozde; Acar, Funda Yagcı; Hasanreisoğlu, Murat; Beker, Levent (2025), "Microneedles with Interdigitated Electrodes for In Situ Impedimetric VEGF Sensing", , Vol.12, No.9, DOI: 10.1002/admi.202400789
Yüksek, Aslı; Yıkınç, Batuhan; Nayır, İrem; Alnıgeniş, Defne; Fidan, Vahap Gazi; Topuz, Tayyip; Akten, Ebru Demet (2025), "Structural Descriptors for Subunit Interface Regions in Homodimers: Effect of Lipid Membrane and Secondary Structure Type", , Vol.65, No.7, 3117-3126 DOI: 10.1021/acs.jcim.4c01233
Kökrek, Emel; Pir, Pınar (2025), "Distinct deregulation trends of transcriptional protein complexes in aging naive T cells", , Vol.117, No.3, DOI: 10.1093/jleuko/qiae231
Yılmaz, Özgür; Biliz, Yağmur; Ayan, Sümeyra; Çevik, Özge; Karahasanoğlu, Müfide; Çotuker, Reyhan; Mert Şahin, Naz Mina; Gökkaya, Kübra; Gülyüz, Sevgi; Yelekçi, Kemal; Küçükgüzel, Güniz (2025), "Design and synthesis of thiosemicarbazides and 1,2,4-triazoles derived from ibuprofen as potential MetAP (type II) inhibitors", , Vol.416, DOI: 10.1016/j.cbi.2025.111555
Mirza, Fuat Kaan; Pekcan, Önder; Hekimoğlu, Mustafa; Baykaş, Tunçer (2025), "Stock price forecasting through symbolic dynamics and state transition graphs with a convolutional recurrent neural network architecture", , Vol.37, No.20, 15855-15890 DOI: 10.1007/s00521-025-11325-z
Mirza, Fuat Kaan; Baykaş, Tunçer; Hekimoğlu, Mustafa; Pekcan, Önder; Tunçay, Gönül Paçacı (2025), "Decoding rhythmic complexity: A nonlinear dynamics approach via visibility graphs for classifying asymmetrical rhythmic frameworks of Turkish classical music", , Vol.507, DOI: 10.1016/j.amc.2025.129565
Erdogan, Nuray Sogunmez; Eroglu, Deniz (2025), "Sparse deconvolution of cell type medleys in spatial transcriptomics", , Vol.21, No.6 JUNE, DOI: 10.1371/journal.pcbi.1013169
Mirza, Fuat Kaan; Öz, Usame; Hekimoğlu, Mustafa; Aydemir, Mehmet Timur; Pural, Yusuf Enes; Baykaş, Tunçer; Pekcan, Önder (2025), "A Novel Multiscale Graph Signal Processing and Network Dynamics Approach to Vibration Analysis for Stone Size Discrimination via Nonlinear Manifold Embeddings and a Convolutional Self-Attention Model", , Vol.58, No.11, 12769-12799 DOI: 10.1007/s00603-025-04779-z
Birgül, Kaan; Atlıhan, İrem; Dere, Damla; Yelekçi, Kemal; Tiber, Pinar Mega; Orun, Oya; Küçükgüzel, Güniz (2025), "Investigation of novel nimesulide derivatives against breast cancer", , Vol.164, DOI: 10.1016/j.bioorg.2025.108850
Firat, Toprak; Eroglu, Deniz (2025), "Data-driven modeling of traffic flow in macroscopic network systems", , Vol.35, No.9, DOI: 10.1063/5.0285930
Ozdes, Celik; Ediger, Volkan; Eroglu, Deniz (2025), "Forecasting critical economic & political events via electricity consumption patterns in the United States of America and Turkey", , Vol.12, No.1, DOI: 10.1057/s41599-025-04904-x
Tülek, Ahmet; Poyraz, Yağmur; Şükür, Gözde; Paçal, Nurettin; Özdemir, F. İnci; Yildirim, Deniz; Eşsiz, Şebnem (2025), "Engineering of Geobacillus kaustophilus lipase for enhanced catalytic efficiency and methanol tolerance in biodiesel production from sunflower oil", , Vol.331, DOI: 10.1016/j.ijbiomac.2025.148467
Mirza, Fuat Kaan; Gürsoy, Ahmet Fazıl; Baykaş, Tunçer; Hekimoğlu, Mustafa; Pekcan, Önder (2024), "Residual LSTM neural network for time dependent consecutive pitch string recognition from spectrograms: a study on Turkish classical music makams", , Vol.83, No.14, 41243-41271 DOI: 10.1007/s11042-023-17105-y
Abbasiasl, Taher; Mirlou, Fariborz; Mirzajani, Hadi; Bathaei, Mohammad Javad; Istif, Emin; Shomalizadeh, Narges; Cebecioğlu, Rümeysa Emine; Özkahraman, Ecem Ezgi; Yener, Umut Can; Beker, Levent (2024), "A Wearable Touch-Activated Device Integrated with Hollow Microneedles for Continuous Sampling and Sensing of Dermal Interstitial Fluid", , Vol.36, No.2, DOI: 10.1002/adma.202304704
Sireci, Siran; Kocagöz, Yigit; Alkiraz, Aysu Sevval; Güler, Kardelen; Dokuzluoglu, Zeynep; Balcioglu, Ecem; Meydanli, Sinem; Demirler, Mehmet Can; Erdogan, Nuray Sögünmez; Fuss, Stefan Herbert (2024), "HB-EGF promotes progenitor cell proliferation and sensory neuron regeneration in the zebrafish olfactory epithelium", , Vol.291, No.10, 2098-2133 DOI: 10.1111/febs.17033
Guner-Yılmaz, Ozde Zeynep; Kurkcuoglu, Ozge; Akten, Ebru Demet (2024), "Tunnel-like region observed as a potential allosteric site in Staphylococcus aureus Glyceraldehyde-3-phosphate dehydrogenase", , Vol.752, DOI: 10.1016/j.abb.2023.109875
Istif, Emin; Ali, Mohsin; Ozuaciksoz, Elif Yaren; Morova, Yagız; Beker, Levent (2024), "Near-Infrared Triggered Degradation for Transient Electronics", , Vol.9, No.2, 2528-2535 DOI: 10.1021/acsomega.3c07203
Özuğur Uysal, Bengü; Osma, Büşra; Evingür, Gülşen Akın; Pekcan, Önder (2024), "The Effect of Pyranine and MoS2 Content on the Optical Properties of Polyacrylamide-MoS2 Composite Gels", , Vol.63, No.11, 1097-1109 DOI: 10.1080/00222348.2024.2302287
Mirlou, Fariborz; Abbasiasl, Taher; Mirzajani, Hadi; Istif, Emin; Akhtar, Muhammad Junaid; Cakır, Cengiz; Beker, Levent (2024), "Continuous Glycemic Monitoring Enabled by A Wi-Fi Energy-Harvesting Wearable Sweat-Sensing Patch", , Vol.9, No.7, DOI: 10.1002/admt.202301583
Albayrak Halac, Fatma; Essiz, Sebnem; Servili, Burak; Altundas, Ramazan; Onur Sucu, Bilgesu; Kulu, Irem (2024), "Synthesis of New Imidazo[1,2-a]pyridine Triazole Hybrid Molecules as Potential Apoptotic Antitumor Agents", , Vol.9, No.8, DOI: 10.1002/slct.202304911
Bakrani, Sajjad; Kiran, Narcicegi; Eroglu, Deniz; Pereira, Tiago (2024), "Cycle-Star Motifs: Network Response to Link Modifications", , Vol.34, No.4, DOI: 10.1007/s00332-024-10034-6
Mert, Naz Mina; Erdogan, Buse; Yelekçi, Kemal (2024), "Repurposing of known drugs from multiple libraries to identify novel and potential selective inhibitors of HDAC6 via in silico approach and molecular modeling", , Vol.10, No.15, DOI: 10.1016/j.heliyon.2024.e35020
Eroglu, Deniz; Boghosian, Bruce M.; Borges, Ernesto P.; Tirnakli, Ugur (2024), "The Statistics of q-Statistics", , Vol.26, No.7, DOI: 10.3390/e26070554
Mirza, Fuat Kaan; Baykaş, Tunçer; Hekimoğlu, Mustafa; Pekcan, Önder; Tunçay, Gönül Paçacı (2024), "Decoding compositional complexity: Identifying composers using a model fusion-based approach with nonlinear signal processing and chaotic dynamics", , Vol.187, DOI: 10.1016/j.chaos.2024.115450
Cassidy, Anna; Farmer, Veronica; Arpağ, Göker; Zanic, Marija (2024), "The GTP-tubulin cap is not the determinant of microtubule end stability in cells", , Vol.35, No.10, DOI: 10.1091/mbc.E24-07-0307
Poyraz, Yağmur; Baltacı, Nisa; Hassan, Gana; Alayoubi, Oubadah; Uysal, Bengü Özuğur; Pekcan, Önder (2024), "Composite Hydrogel of Polyacrylamide/Starch/Gelatin as a Novel Amoxicillin Delivery System", , Vol.10, No.10, DOI: 10.3390/gels10100625
Turkmenoglu, Ipek; Kurtulus, Gamze; Sesal, Cenk; Kurkcuoglu, Ozge; Ayyildiz, Merve; Celiker, Serkan; Ozhelvaci, Fatih; Du, Xin; Liu, George Y.; Arditi, Moshe; Akten, Ebru Demet (2024), "Effective drug design screening in bacterial glycolytic enzymes via targeting alternative allosteric sites", , Vol.762, DOI: 10.1016/j.abb.2024.110190
Boumezber, Sarah; Yelekçi, Kemal (2023), "Screening of novel and selective inhibitors for neuronal nitric oxide synthase (nNOS) via structure-based drug design techniques", , Vol.41, No.8, 3607-3629 DOI: 10.1080/07391102.2022.2054471
Ozdes, Celik; Eroglu, Deniz (2023), "Transformation cost spectrum for irregularly sampled time series", , Vol.232, No.1, 35-46 DOI: 10.1140/epjs/s11734-022-00512-x
Erensoy, Gizem; Ding, Kai; Zhan, Chang Guo; Çiftçi, Gamze; Yelekçi, Kemal; Duracık, Merve; Bingöl Özakpınar, Özlem; Aydemir, Esra; Yılmaz, Zübeyde Nur; Şahin, Fikrettin; Kulabaş, Necla; Tatar, Esra; Küçükgüzel, İlkay (2023), "Synthesis, in vitro and in silico studies on novel 3-aryloxymethyl-5-[(2-oxo-2-arylethyl)sulfanyl]-1,2,4-triazoles and their oxime derivatives as potent inhibitors of mPGES-1", , Vol.1272, DOI: 10.1016/j.molstruc.2022.134154
Yelekçi, Kemal; Erdem, Safiye Sağ (2023), "Computational Chemistry and Molecular Modeling of Reversible MAO Inhibitors", , 1:
Bülbül, Bahadır; Ding, Kai; Zhan, Chang Guo; Çiftçi, Gamze; Yelekçi, Kemal; Gürboğa, Merve; Özakpınar, Özlem Bingöl; Aydemir, Esra; Baybağ, Deniz; Şahin, Fikrettin; Kulabaş, Necla; Helvacıoğlu, Sinem; Charehsaz, Mohammad; Tatar, Esra; Özbey, Süheyla; Küçükgüzel, İlkay (2023), "Novel 1,2,4-triazoles derived from Ibuprofen: synthesis and in vitro evaluation of their mPGES-1 inhibitory and antiproliferative activity", , Vol.27, No.5, 2185-2215 DOI: 10.1007/s11030-022-10551-0
Osma, Büşra; Pekcan, Önder; Akın Evingür, Gülşen (2023), "Kinetics models for polyacrylamide-graphene oxide composites as antifoulant", , Vol.63, No.1, 238-248 DOI: 10.1002/pen.26201
Bathaei, Mohammad Javad; Singh, Rahul; Mirzajani, Hadi; Istif, Emin; Akhtar, Muhammad Junaid; Abbasiasl, Taher; Beker, Levent (2023), "Photolithography-Based Microfabrication of Biodegradable Flexible and Stretchable Sensors", , Vol.35, No.6, DOI: 10.1002/adma.202207081
Ünver, Batuhan; Pekcan, Önder; Akın Evingür, Gülşen (2023), "Optical and mechanical properties of PNIPAm-MWCNTs and PNIPAm-GO composites", , Vol.140, No.9, DOI: 10.1002/app.53539
Tülek, Ahmet; Günay, Elif; Servili, Burak; Essiz, Sebnem; Binay, Barış; Yildirim, Deniz (2023), "Sustainable production of formic acid from CO2 by a novel immobilized mutant formate dehydrogenase", , Vol.309, DOI: 10.1016/j.seppur.2022.123090
Tsallis, Constantino; Lima, Henrique Santos; Tirnakli, Ugur; Eroglu, Deniz (2023), "First-principle validation of Fourier's law in d=1,2,3 classical systems", , Vol.446, DOI: 10.1016/j.physd.2023.133681
Topal, Irem; Eroglu, Deniz (2023), "Reconstructing Network Dynamics of Coupled Discrete Chaotic Units from Data", , Vol.130, No.11, DOI: 10.1103/PhysRevLett.130.117401
Kalaycıoğlu, Zeynep; Özuğur Uysal, Bengü; Pekcan, Önder; Erim, F. Bedia (2023), "Efficient Photocatalytic Degradation of Methylene Blue Dye from Aqueous Solution with Cerium Oxide Nanoparticles and Graphene Oxide-Doped Polyacrylamide", , Vol.8, No.14, 13004-13015 DOI: 10.1021/acsomega.3c00198
Istif, Emin; Mirzajani, Hadi; Dağ, Çağdaş; Mirlou, Fariborz; Ozuaciksoz, Elif Yaren; Cakır, Cengiz; Koydemir, Hatice Ceylan; Yilgor, Iskender; Yilgor, Emel; Beker, Levent (2023), "Miniaturized wireless sensor enables real-time monitoring of food spoilage", , Vol.4, No.5, 427-436 DOI: 10.1038/s43016-023-00750-9
Istif, Emin; Beker, Levent (2023), "A low-cost wireless miniaturized device for food spoilage monitoring", , DOI: 10.1038/s43016-023-00752-7
Ali, Mohsin; Bathaei, Mohammad Javad; Istif, Emin; Karimi, Seyed Nasir Hosseini; Beker, Levent (2023), "Biodegradable Piezoelectric Polymers: Recent Advancements in Materials and Applications", , Vol.12, No.23, DOI: 10.1002/adhm.202300318
Shirzad, Mohammad Musa; Kulabaş, Necla; Erdoğan, Ömer; Çevik, Özge; Dere, Damla; Yelekçi, Kemal; Danış, Özkan; Küçükgüzel, İlkay (2023), "Novel azole-urea hybrids as VEGFR-2 inhibitors: Synthesis, in vitro antiproliferative evaluation and in silico studies", , Vol.1294, DOI: 10.1016/j.molstruc.2023.136448
Argunsah, Ali Özgür; Israely, Inbal (2023), "Homosynaptic plasticity induction causes heterosynaptic changes at the unstimulated neighbors in an induction pattern and location-specific manner", , Vol.17, DOI: 10.3389/fncel.2023.1253446
Bilget Guven, Ebru; Durmaz Sahin, Irem; Altiparmak, Duygu; Servili, Burak; Essiz, Sebnem; Cetin-Atalay, Rengul; Tuncbilek, Meral (2023), "Newly synthesized 6-substituted piperazine/phenyl-9-cyclopentyl containing purine nucleobase analogs act as potent anticancer agents and induce apoptosis via inhibiting Src in hepatocellular carcinoma cells", , Vol.14, No.12, 2658-2676 DOI: 10.1039/d3md00440f
Tareq, Shahad; Kirkil, Gokhan; Özuğur Uysal, Bengü (2023), "Superior Conductivity of Transparent ZnO/MoS2 Composite Films for Optoelectronic and Solar Cell Applications", , Vol.9, No.11, DOI: 10.3390/gels9110906
Rinch, Wardah Afzal; Sogunmez, Nuray; Altaf, Aiman; Alsan, Huseyin Fuat; Arsan, Taner (2023), "Deciphering the Cluster-Specific Marker Genes via Integration of Single Cell RNA Sequencing Datasets", , DOI: 10.1109/ASYU58738.2023.10296679
Beytür, Sercan; Essiz, Sebnem; Özuğur Uysal, Bengü (2023), "Investigation of Structural and Antibacterial Properties of WS2-Doped ZnO Nanoparticles", , DOI: 10.1021/acsomega.3c09041
Düzkan, Berke; Uysal, Bengü Özuğur; Pekcan, Önder (2022), "Surfactant-free one-step fabrication of gelatin/PAAm/MWCNT composites for biomedical applications", , Vol.79, No.3, 1597-1614 DOI: 10.1007/s00289-021-03574-4
Albayati, Safana; Uba, Abdullahi Ibrahim; Yelekçi, Kemal (2022), "Potential inhibitors of methionine aminopeptidase type II identified via structure-based pharmacophore modeling", , Vol.26, No.2, 1005-1016 DOI: 10.1007/s11030-021-10221-7
Metin, Reyhan; Akten, Ebru Demet (2022), "Drug repositioning to propose alternative modulators for glucocorticoid receptor through structure-based virtual screening", , Vol.40, No.21, 11418-11433 DOI: 10.1080/07391102.2021.1960608
Celebi, Metehan; Inan, Tugce; Kurkcuoglu, Ozge; Akten, Ebru Demet (2022), "Potential allosteric sites captured in glycolytic enzymes via residue-based network models: Phosphofructokinase, glyceraldehyde-3-phosphate dehydrogenase and pyruvate kinase", , Vol.280, DOI: 10.1016/j.bpc.2021.106701
Özuğur Uysal, Bengü; Akın Evingür, Gülşen; Pekcan, Önder (2022), "Polyacrylamide mediated polyvinyl pyrrolidone composites incorporated with aligned molybdenum disulfide", , Vol.139, No.18, DOI: 10.1002/app.52061
Ata Ouda Al-Masri, Rahaf; Audu-Bida, Hajara; Eşsiz, Şebnem (2022), "Modelling of C-terminal tail of human STING and its interaction with tank-binding kinase 1", , Vol.46, No.1, 69-81 DOI: 10.3906/biy-2108-90
Braun, Tobias; Fernandez, Cinthya N.; Eroglu, Deniz; Hartland, Adam; Breitenbach, Sebastian F.M.; Marwan, Norbert (2022), "Sampling rate-corrected analysis of irregularly sampled time series", , Vol.105, No.2, DOI: 10.1103/PhysRevE.105.024206
Birgül, Kaan; Uba, Abdullah Ibrahim; Çuhadar, Ozan; Sevinç, Sevgi Koçyiğit; Tiryaki, Selen; Tiber, Pınar Mega; Orun, Oya; Telci, Dilek; Yılmaz, Özgür; Yelekçi, Kemal; Güniz Küçükgüzel, (2022), "Synthesis and molecular modeling of MetAP2 of thiosemicarbazides, 1,2,4-triazoles, thioethers derived from (S)-Naproxen as possible breast cancer agents", , Vol.1259, DOI: 10.1016/j.molstruc.2022.132739
Bakrani, Sajjad; Lamb, Jeroen S.W.; Turaev, Dmitry (2022), "Invariant manifolds of homoclinic orbits and the dynamical consequences of a super-homoclinic: A case study in R4 with Z2-symmetry and integral of motion", , Vol.327, 1-63 DOI: 10.1016/j.jde.2022.04.002
Celebi, Metehan; Akten, Ebru Demet (2022), "Altered Dynamics of S. aureus Phosphofructokinase via Bond Restraints at Two Distinct Allosteric Binding Sites", , Vol.434, No.17, DOI: 10.1016/j.jmb.2022.167646
Polat, Emre Ozan; Cetin, M. Mustafa; Tabak, Ahmet Fatih; Güven, Ebru Bilget; Uysal, Bengü Özuğur; Arsan, Taner; Kabbani, Anas; Hamed, Houmeme; Gül, Sümeyye Berfin (2022), "Transducer Technologies for Biosensors and Their Wearable Applications", , Vol.12, No.6, DOI: 10.3390/bios12060385
Babandi, Abba; Anosike, Chioma A.; Ezeanyika, Lawrence U.S.; Yelekçi, Kemal; Uba, Abdullahi Ibrahim (2022), "Molecular modeling studies of some phytoligands from Ficus sycomorus fraction as potential inhibitors of cytochrome CYP6P3 enzyme of Anopheles coluzzii", , Vol.15, No.2, 258-275 DOI: 10.35516/jjps.v15i2.324
Duan, Chao; Nishikawa, Takashi; Eroglu, Deniz; Motter, Adilson E. (2022), "Network structural origin of instabilities in large complex systems", , Vol.8, No.28, DOI: 10.1126/sciadv.abm8310
Nijholt, Eddie; Ocampo-Espindola, Jorge Luis; Eroglu, Deniz; Kiss, István Z.; Pereira, Tiago (2022), "Emergent hypernetworks in weakly coupled oscillators", , Vol.13, No.1, DOI: 10.1038/s41467-022-32282-4
Cetin, M. Mustafa; Peng, Wenjing; Unruh, Daniel; Mayer, Michael F.; Mechref, Yehia; Yelekci, Kemal (2022), "Design, synthesis, molecular modeling, and bioactivity evaluation of 1,10-phenanthroline and prodigiosin (Ps) derivatives and their Copper(I) complexes against mTOR and HDAC enzymes as highly potent and effective new anticancer therapeutic drugs", , Vol.13, DOI: 10.3389/fphar.2022.980479
Zhu, Dingsheng; Sun, Bin; Tong, Lu; Wu, Yating; Cetin, M. Mustafa; Li, Hao (2022), "A π-Electron Rich Cage via the Friedel-Crafts Reaction", , Vol.24, No.49, 8980-8985 DOI: 10.1021/acs.orglett.2c03560
Durmaz, Sümeyye; Yildiz, Ekrem; Uysal, Bengü Özuğur; Pekcan, Önder (2022), "3D self-assemble formation of molybdenum disulfide (MoS2)-doped polyacrylamide (PAAm) composite hydrogels", , Vol.46, No.6, 239-251 DOI: 10.55730/1300-0101.2730
Evingür, Gülşen Akın; Sağlam, Nafia Alara; Çimen, Büşra; Uysal, Bengü Özuğur; Pekcan, Önder (2021), "The WS2 dependence on the elasticity and optical band gap energies of swollen PAAm composites", , Vol.55, No.1, 71-76 DOI: 10.1177/0021998320944210
Elmezayen, Ammar D.; Yelekçi, Kemal (2021), "Homology modeling and in silico design of novel and potential dual-acting inhibitors of human histone deacetylases HDAC5 and HDAC9 isozymes", , Vol.39, No.17, 6396-6414 DOI: 10.1080/07391102.2020.1798812
Arda, Ertan; Kara, Selim; Pekcan, Önder; Akın Evingür, Gülşen (2021), "Evaluation of the fractal dimension of polyacrylamide during gelation and swelling", , Vol.26, DOI: 10.1016/j.mtcomm.2020.101980
Eroglu, Deniz (2021), "Network dynamics reconstruction from data", , Vol.44, No.4, 394-403 DOI: 10.3906/fiz-2004-7
Salgin-Goksen, Umut; Telli, Gokcen; Erikci, Acelya; Dedecengiz, Ezgi; Tel, Banu Cahide; Kaynak, F. Betul; Yelekci, Kemal; Ucar, Gulberk; Gokhan-Kelekci, Nesrin (2021), "New 2-Pyrazoline and Hydrazone Derivatives as Potent and Selective Monoamine Oxidase A Inhibitors", , Vol.64, No.4, 1989-2009 DOI: 10.1021/acs.jmedchem.0c01504
Hu, Guang; Doruker, Pemra; Li, Hongchun; Demet Akten, Ebru (2021), "Editorial: Understanding Protein Dynamics, Binding and Allostery for Drug Design", , Vol.8, DOI: 10.3389/fmolb.2021.681364
Banerjee, Abhirup; Goswami, Bedartha; Hirata, Yoshito; Eroglu, Deniz; Merz, Bruno; Kurths, Jurgen; Marwan, Norbert (2021), "Recurrence analysis of extreme event-like data", , Vol.28, No.2, 213-229 DOI: 10.5194/npg-28-213-2021
Essiz, Sebnem; Gencel, Melis; Aktolun, Muhammed; Demir, Ayhan; Carpenter, Timothy S.; Servili, Burak (2021), "Correlated conformational dynamics of the human GluN1-GluN2A type N-methyl-D-aspartate (NMDA) receptor", , Vol.27, No.6, DOI: 10.1007/s00894-021-04755-8
Elmezayen, Ammar D.; Kemal, Yelekçi (2021), "Structure-based virtual screening for novel potential selective inhibitors of class IIa histone deacetylases for cancer treatment", , Vol.92, DOI: 10.1016/j.compbiolchem.2021.107491
Elmezayen, Ammar D.; Al-Obaidi, Anas; Yelekçi, Kemal (2021), "Discovery of novel isoform-selective histone deacetylases 5 and 9 inhibitors through combined ligand-based pharmacophore modeling, molecular mocking, and molecular dynamics simulations for cancer treatment", , Vol.106, DOI: 10.1016/j.jmgm.2021.107937
Al-Obaidi, Anas; Elmezayen, Ammar D.; Yelekçi, Kemal (2021), "Homology modeling of human GABA-AT and devise some novel and potent inhibitors via computer-aided drug design techniques", , Vol.39, No.11, 4100-4110 DOI: 10.1080/07391102.2020.1774417
Nayır, Şeyma; Kıvrak, Sena; Kara, İrem; Uysal, Bengü Özuğur; Pekcan, Önder (2021), "Tungsten disulfide (WS2) doped polyacrylamide (PAAm) composites: Gelation and optical studies", , Vol.245, DOI: 10.1016/j.ijleo.2021.167673
Aksoy, Halil; Şekerler, Turgut; Mert, Naz Mina (2021), "In silico investigation of wound healing potential of some compounds in tubers of asphodelus species with gsk3-β protein", , Vol.25, No.5, 747-754 DOI: 10.29228/jrp.65
Marwan, Norbert; Donges, Jonathan F.; Donner, Reik V.; Eroglu, Deniz (2021), "Nonlinear time series analysis of palaeoclimate proxy records", , Vol.274, DOI: 10.1016/j.quascirev.2021.107245
Uğur, Şaziye; Pekcan, Önder (2021), "Application of fluorescence technique for understanding film formation from polymer latexes and composites", , 1: 1
Uysal, Bengü Özuǧur; Arier, Ümit Özlem Akkaya; Pekcan, Önder (2020), "TAILORING the ELECTRICAL and OPTICAL PROPERTIES of CARBON NANOTUBE REINFORCED TRANSPARENT TiO 2 COMPOSITES by VARYING NANOTUBE CONCENTRATIONS", , Vol.27, No.2, DOI: 10.1142/S0218625X19501038
Uba, Abdullahi Ibrahim; Weako, Jackson; Keskin, Özlem; Gürsoy, Attila; Yelekçi, Kemal (2020), "Examining the stability of binding modes of the co-crystallized inhibitors of human HDAC8 by molecular dynamics simulation", , Vol.38, No.6, 1751-1760 DOI: 10.1080/07391102.2019.1615989
Sunay, M. Selin; Uğur, Şaziye; Pekcan, Önder (2020), "Fluorescence and photon transmission techniques for studying film formation from PS/GO nanocomposites", , Vol.77, No.6, 3061-3077 DOI: 10.1007/s00289-019-02897-7
Uba, Abdullahi Ibrahim; Yelekçi, Kemal (2020), "Crystallographic structure versus homology model: a case study of molecular dynamics simulation of human and zebrafish histone deacetylase 10", , Vol.38, No.15, 4397-4406 DOI: 10.1080/07391102.2019.1691658
Evingür, Gülşen Akın; Pekcan, Önder (2020), "Fractal dimension and phase transition of graphene oxide (GO) doped polyacrylamide", , Vol.84, DOI: 10.1016/j.polymertesting.2020.106386
Sari, Suat; Kart, Didem; Öztürk, Naile; Kaynak, F. Betül; Gencel, Melis; Taşkor, Gülce; Karakurt, Arzu; Saraç, Selma; Eşsiz, Şebnem; Dalkara, Sevim (2020), "Corrigendum to “Discovery of new azoles with potent activity against Candida spp. and Candida albicans biofilms through virtual screening” [Eur. J. Med. Chem. 179 (2019) 634–648](S0223523419306105)(10.1016/j.ejmech.2019.06.083)", , Vol.190, DOI: 10.1016/j.ejmech.2020.112130
Kucukdumlu, Asligul; Tuncbilek, Meral; Guven, Ebru Bilget; Atalay, Rengul Cetin (2020), "Design, synthesis and in vitro cytotoxic activity of new 6,9-disubstituted purine analogues", , Vol.67, No.1, 70-82 DOI: 10.17344/acsi.2019.5196
Weako, Jackson; Uba, Abdullahi Ibrahim; Keskin, Özlem; Gürsoy, Attila; Yelekçi, Kemal (2020), "Identification of potential inhibitors of human methionine aminopeptidase (type II) for cancer therapy: Structure-based virtual screening, ADMET prediction and molecular dynamics studies", , Vol.86, DOI: 10.1016/j.compbiolchem.2020.107244
Elmezayen, Ammar D.; Al-Obaidi, Anas; Şahin, Alp Tegin; Yelekçi, Kemal (2020), "Drug repurposing for coronavirus (COVID-19): in silico screening of known drugs against coronavirus 3CL hydrolase and protease enzymes", , 1-13 DOI: 10.1080/07391102.2020.1758791
Ayyildiz, Merve; Celiker, Serkan; Ozhelvaci, Fatih; Akten, E. Demet (2020), "Identification of Alternative Allosteric Sites in Glycolytic Enzymes for Potential Use as Species-Specific Drug Targets", , Vol.7, DOI: 10.3389/fmolb.2020.00088
Sogunmez, Nuray; Akten, Ebru Demet (2020), "Distinctive communication networks in inactive states of β2-adrenergic receptor: Mutual information and entropy transfer analysis", , Vol.88, No.11, 1458-1471 DOI: 10.1002/prot.25965
Erensoy, Gizem; Ding, Kai; Zhan, Chang Guo; Elmezayen, Ammar; Yelekçi, Kemal; Duracik, Merve; Bingöl Özakpinar, Özlem; Küçükgüzel, İlkay (2020), "Synthesis, in silico studies and cytotoxicity evaluation of novel 1,3,4-oxadiazole derivatives designed as potential mPGES-1 inhibitors", , Vol.24, No.4, 436-451 DOI: 10.35333/jrp.2020.187
Eroglu, Deniz; Tanzi, Matteo; Van Strien, Sebastian; Pereira, Tiago (2020), "Revealing Dynamics, Communities, and Criticality from Data", , Vol.10, No.2, DOI: 10.1103/PhysRevX.10.021047
Åžahin, H. Bahar; Åžahin, H. Bahar; Sayin, Sercan; Sayin, Sercan; Holder, Maxine; BuÄra, KuyaÅ; BuÄra, KuyaÅ; Elikid, Arzu C.; Elikid, Arzu C. (2020), "Salt inducible kinases as novel Notch interactors in the developing Drosophila retina", , Vol.15, No.6, DOI: 10.1371/journal.pone.0234744
Yılmaz, Özgür; Bayer, Burak; Bekçi, Hatice; Uba, Abdullahi I.; Cumaoğlu, Ahmet; Yelekçi, Kemal; Güniz Küçükgüzel, (2020), "Synthesis, anticancer activity on prostate cancer cell lines and molecular modeling studies of flurbiprofen-thioether derivatives as potential target of metap (Type ii)", , Vol.16, No.6, 735-749 DOI: 10.2174/1573406415666190613162322
Birgül, Kaan; Yıldırım, Yeliz; Karasulu, H. Yeşim; Karasulu, Ercüment; Uba, Abdullah Ibrahim; Yelekçi, Kemal; Bekçi, Hatice; Cumaoğlu, Ahmet; Kabasakal, Levent; Yılmaz, Özgür; Küçükgüzel, Güniz (2020), "Synthesis, molecular modeling, in vivo study and anticancer activity against prostate cancer of (+) (S)-naproxen derivatives", , Vol.208, DOI: 10.1016/j.ejmech.2020.112841
Prasad, Sushma; Marwan, Norbert; Eroglu, Deniz; Goswami, Bedartha; Mishra, Praveen K.; Gaye, Birgit; Anoop, A.; Basavaiah, N.; Stebich, Martina; Jehangir, Arshid (2020), "Holocene climate forcings and lacustrine regime shifts in the Indian summer monsoon realm", , Vol.45, No.15, 3842-3853 DOI: 10.1002/esp.5004
Peron, Thomas; Eroglu, Deniz; Rodrigues, Francisco A.; Moreno, Yamir (2020), "Collective dynamics of random Janus oscillator networks", , Vol.2, No.1, DOI: 10.1103/PhysRevResearch.2.013255
Atilgan, Ahmet; Cetin, M. Mustafa; Yu, Jierui; Beldjoudi, Yassine; Liu, Jian; Stern, Charlotte L.; Cetin, Furkan M.; Islamoglu, Timur; Farha, Omar K.; Deria, Pravas; Stoddart, J. Fraser; Hupp, Joseph T. (2020), "Post-synthetically elaborated BODIPY-based porous organic polymers (POPs) for the photochemical detoxification of a sulfur mustard simulant", , Vol.142, No.43, 18554-18564 DOI: 10.1021/jacs.0c07784
Djikic, Teodora; Martí, Yasmina; Spyrakis, Francesca; Lau, Thorsten; Benedetti, Paolo; Davey, Gavin; Schloss, Patrick; Yelekci, Kemal (2019), "Human dopamine transporter: the first implementation of a combined in silico/in vitro approach revealing the substrate and inhibitor specificities", , Vol.37, No.2, 291-306 DOI: 10.1080/07391102.2018.1426044
Mergen, Ömer Bahadır; Arda, Ertan; Kara, Selim; Pekcan, Önder (2019), "Effects of GNP addition on optical properties and band gap energies of PMMA films", , Vol.40, No.5, 1862-1869 DOI: 10.1002/pc.24948
Goksen, Umut Salgin; Sarigul, Sevgi; Bultinck, Patrick; Herrebout, Wouter; Dogan, Ilknur; Yelekci, Kemal; Ucar, Gulberk; Gokhan Kelekci, Nesrin (2019), "Absolute configuration and biological profile of pyrazoline enantiomers as MAO inhibitory activity", , Vol.31, No.1, 21-33 DOI: 10.1002/chir.23027
Samorlu, Augustine S.; Yelekçi, Kemal; Ibrahim Uba, Abdullahi (2019), "The design of potent HIV-1 integrase inhibitors by a combined approach of structure-based virtual screening and molecular dynamics simulation", , Vol.37, No.17, 4644-4650 DOI: 10.1080/07391102.2018.1557559
Ibrahim Uba, Abdullahi; Yelekçi, Kemal (2019), "Homology modeling of human histone deacetylase 10 and design of potential selective inhibitors", , Vol.37, No.14, 3627-3636 DOI: 10.1080/07391102.2018.1521747
Dilcan, Gonca; Doruker, Pemra; Akten, Ebru Demet (2019), "Ligand-binding affinity of alternative conformers of human β2-adrenergic receptor in the presence of intracellular loop 3 (ICL3) and their potential use in virtual screening studies", , Vol.93, No.5, 883-899 DOI: 10.1111/cbdd.13478
Nicolaou, Zachary G.; Eroglu, Deniz; Motter, Adilson E. (2019), "Multifaceted Dynamics of Janus Oscillator Networks", , Vol.9, No.1, DOI: 10.1103/PhysRevX.9.011017
Uysal, Bengü Özuğur; Tepehan, Fatma Z. (2019), "Determination of growth kinetics and size dependent structural, morphological, optical characteristics of sol-gel derived silica nanoparticles in silica matrix", , Vol.37, No.1, 16-24 DOI: 10.2478/msp-2019-0010
Bilge, Ayse Humeyra; Ogrenci, Arif Selcuk; Pekcan, Onder (2019), "Mathematical models for phase transitions in biogels", , Vol.33, No.9, DOI: 10.1142/S0217984919501112
Sogunmez, Nuray; Akten, E. Demet (2019), "Intrinsic Dynamics and Causality in Correlated Motions Unraveled in Two Distinct Inactive States of Human β 2 -Adrenergic Receptor", , Vol.123, No.17, 3630-3642 DOI: 10.1021/acs.jpcb.9b01202
Han, Muhammed; Bekçi, Hatice; Uba, Abdullahi I.; Yıldırım, Yeliz; Karasulu, Ercüment; Cumaoğlu, Ahmet; Karasulu, Hatice Y.; Yelekçi, Kemal; Yılmaz, Özgür; Küçükgüzel, Güniz (2019), "Synthesis, molecular modeling, in vivo study, and anticancer activity of 1,2,4-triazole containing hydrazide–hydrazones derived from (S)-naproxen", , Vol.352, No.6, DOI: 10.1002/ardp.201800365
Coşkun, Göknil Pelin; Djikic, Teodora; Kalaycı, Sadık; Yelekçi, Kemal; Şahin, Fikrettin; Güniz Küçükgüzel, (2019), "Synthesis, molecular modelling and antibacterial activity against helicobacter pylori of novel diflunisal derivatives as urease enzyme inhibitors", , Vol.16, No.4, 392-400 DOI: 10.2174/1570180815666180627130208
Burmaoglu, Serdar; Ozcan, S.; Balcioglu, S.; Gencel, M.; Noma, Samir Abbas Ali; Essiz, Sebnem; Ates, Burhan; Algul, Oztekin (2019), "Synthesis, biological evaluation and molecular docking studies of bis-chalcone derivatives as xanthine oxidase inhibitors and anticancer agents", , Vol.91, DOI: 10.1016/j.bioorg.2019.103149
Sari, Suat; Kart, Didem; Sabuncuoğlu, Suna; Doğan, İnci Selin; Özdemir, Zeynep; Bozbey, İrem; Gencel, Melis; Eşsiz, Şebnem; Reynisson, Jóhannes; Karakurt, Arzu; Saraç, Selma; Dalkara, Sevim (2019), "Antifungal screening and in silico mechanistic studies of an in-house azole library", , Vol.94, No.5, 1944-1955 DOI: 10.1111/cbdd.13587
Osma, Büsra; Evingür, Gülsen Akin; Pekcan, Önder (2019), "Effect of temperature and graphene oxide on the swelling of PAAm-GO composite gels", , DOI: 10.11159/icnfa19.146
Evingür, Gülşen Akin; Pekcan, Önder (2019), "Graphene oxide-polyacrylamide composites: Optical and mechanical characterizations", , 1: 1
Evingür, Gülşen Akın; Pekcan, Önder (2018), "Optical energy band gap of PAAm-GO composites", , Vol.183, No.1, 212-215 DOI: 10.1016/j.compstruct.2017.02.058
Uba, Abdullahi Ibrahim; Yelekçi, Kemal (2018), "Identification of potential isoform-selective histone deacetylase inhibitors for cancer therapy: A combined approach of structure-based virtual screening, admet prediction and molecular dynamics simulation assay", , Vol.36, No.12, 3231-3245 DOI: 10.1080/07391102.2017.1384402
Arda, Ertan; Mergen, Ömer Bahadır; Pekcan, Önder (2018), "Electrical and optical percolations in PMMA/GNP composite films", , Vol.91, No.5, 546-557 DOI: 10.1080/01411594.2018.1432053
Evingür, Gülşen Akin; Pekcan, Önder (2018), "Temperature Effect on the Elasticity of Acrylamide-n-Isopropylacrylamide Copolymers", , Vol.57, No.2, 168-175 DOI: 10.1080/00222348.2018.1436339
Çoruh, Işıl; Çevik, Özge; Yelekçi, Kemal; Djikic, Teodora; Küçükgüzel, Güniz (2018), "Synthesis, anticancer activity, and molecular modeling of etodolac-thioether derivatives as potent methionine aminopeptidase (type II) inhibitors", , Vol.351, No.3-4, DOI: 10.1002/ardp.201700195
Ogrenci, Arif Selcuk; Pekcan, Onder; Kara, Selim; Bilge, Ayse Humeyra (2018), "Mathematical Characterization of Thermo-reversible Phase Transitions of Agarose Gels", , Vol.57, No.5, 364-376 DOI: 10.1080/00222348.2018.1463052
Uba, Abdullahi Ibrahim; Yelekçi, Kemal (2018), "Carboxylic acid derivatives display potential selectivity for human histone deacetylase 6: Structure-based virtual screening, molecular docking and dynamics simulation studies", , Vol.75, 131-142 DOI: 10.1016/j.compbiolchem.2018.05.004
Uysal, B. O.; Pekcan, O. (2018), "Fractal features and structural, morphological, optical characteristics of sol–gel derived silica nanoparticled thin films", , Vol.133, No.5, 1160-1164 DOI: 10.12693/APhysPolA.133.1160
Ayan, Meral; Essiz, Sebnem (2018), "The neural γ2α1β2α1β2 gamma amino butyric acid ion channel receptor: structural analysis of the effects of the ivermectin molecule and disulfide bridges", , Vol.24, No.8, DOI: 10.1007/s00894-018-3739-z
Coşkun, Göknil Pelin; Djikic, Teodora; Hayal, Taha Bartu; Türkel, Nezaket; Yelekçi, Kemal; Şahin, Fikrettin; Küçükgüzel, Güniz (2018), "Synthesis, molecular docking and anticancer activity of diflunisal derivatives as cyclooxygenase enzyme inhibitors", , Vol.23, No.8, DOI: 10.3390/molecules23081969
Evingür, Gülşen Akın; Pekcan, Önder (2018), "Mechanical properties of graphene oxide–polyacrylamide composites before and after swelling in water", , Vol.75, No.4, 1431-1439 DOI: 10.1007/s00289-017-2101-4
Uba, Abdullahi Ibrahim; Yelekçi, Kemal (2018), "Pharmacophore-based virtual screening for identification of potential selective inhibitors of human histone deacetylase 6", , Vol.77, 318-330 DOI: 10.1016/j.compbiolchem.2018.10.016
Evranos-Aksöz, Begüm; Uçar, Gülberk; Yelekçi, Kemal (2018), "Investigation of synthesis, molecular modelling and monoaminoxidase inhibitor activity of a new 2-pyrazoline compound", , Vol.75, No.3, 253-264 DOI: 10.5505/TurkHijyen.2018.59219
Kara, Selim; Arda, Ertan; Pekcan, Önder (2018), "Fractal Dimensions of κ-Carrageenan Gels during Gelation and Swelling", , Vol.57, No.11-12, 715-731 DOI: 10.1080/00222348.2018.1527506